Could you do the same thing with your real issue tracking software? Your agent could use an MCP to create a Jira ticket and create subtasks or tasks for your subagents? Then you don't need to clutter up your repo with these MD files and .beads directories and what not.
Yes you can. I've experimented a bit with using the `gh` CLI tool to work with issues in a GitHub repository, but I don't particularly like the aesthetics of having a bunch of LLM-generated prose in my issue trackers like that.
