We do all the time. In industrial automation COM ports are still shockingly popular, although it's usually the USB emulated variety. On a lot of our development and on some of our production tools we end up with COM20 or COM30, not because we have that many running at one time but because over time we've plugged in that many distinct devices. Nowadays most drivers will assign COM(n+1) when they see a device with a new serial number.
UART is available on nearly every microcontroller under the sun, and USB<->UART serial chips are super cheap, so it makes complete sense to me that'd become the defacto system for interfacing the automation controller with a computer
Even beyond that, USB is available on many microcontrollers, a USB CDC device is dead simple to implement, the drivers are baked into every modern OS, and all the software developers operating at that layer already know how to interact with text streams. Add in the ease of debugging when you can just manually send/receive ASCII to operate a device, and you've got the makings of a standard practice.
