Prey was an excellent game that I really enjoyed. To me it's not quite the same, since it's not as dense with people/NPCs. The only games that I can recall really coming close to Deus Ex are... Deus Ex Human Revolution and Mankind Divided.
I don't know, I don't see the similarity. I didn't really like Prey (or any prop hunt games for that matter). It's a new genre mix. I guess I can see the appeal.
Disclaimer: I never played the first Deus Ex, but I got more of a Bioshock vibe from Prey (2017), and that one had a somewhat original take on the FPS genre by adding scarcity. Great setting too.