You misunderstood. I was relaying that I, too, have a decent grasp of sampling theory, and that if I understand the article's main premise, then saying they have disproven Nyquist's Theorem with this example is akin to saying that being able to draw both 30 degree and 90 degree angles with a compass disproves the idea that angle trisection is generally impossible.
They have simply shifted in time the sampling of the noise. Even if they argue they synthesize the noise in realtime, they had to have sampled it at some point to know what to synthesize in the first place. It was at this point that they were required to sample at at least 2MHz to accurately quantify their noise at 1MHz.
The mechanism used in pilot's noise cancelling headphones is much the same. they don't sample the engine noise as its being made, they synthesize it from known frequencies.